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Junjie Zhang

Zhang, Junjie
Junjie Zhang
Assistant Professor
ILSB 2157A
Undergraduate Education
B.S. (2004) Physics, Fudan University
Graduate Education
Ph.D. (2009) Structural Biology, Baylor College of Medicine
Postdoc. Structural Biology, Stanford University (2009-13)
Joined Texas A&M in January 1, 2014

Cryo-EM of Cellular Machineries

The living cell contains a collection of molecular machines to grow and function. These machines include the ribosomes, the chaperons, the proteasomes and other enzymes. Malfunction of these machines, if occurred in human, are related to many diseases. Understanding their three-dimensional (3D) structures is essential to understand how these machines work in the cell and eventually to treat those related diseases.

Here we use an experimental technique called cryo-electron microscopy (cryo-EM) to image these cellular machines in their native environment at liquid nitrogen temperatures. We then use image processing and graphics techniques to visualize their 3D structures, answering the questions such as how they assemble and how they interact with each other.

In addition, we develop computational modeling tools to interpret and animate these obtained 3D structures to further describe their movements and dynamics.

Research Publications

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  1. Krieger, IV, Kuznetsov, V, Chang, JY, Zhang, J, Moussa, SH, Young, RF et al.. The Structural Basis of T4 Phage Lysis Control: DNA as the Signal for Lysis Inhibition. J. Mol. Biol. 2020;432 (16):4623-4636.
    doi: 10.1016/j.jmb.2020.06.013. PubMed PMID:32562709. PubMed Central PMC7394242.

  2. Peng, Z, Simeon, R, Mitchell, SB, Zhang, J, Feng, H, Chen, Z et al.. Designed Ankyrin Repeat Protein (DARPin) Neutralizers of TcdB from Clostridium difficile Ribotype 027. mSphere. 2019;4 (5):.
    doi: 10.1128/mSphere.00596-19. PubMed PMID:31578248. PubMed Central PMC6796971.

  3. Wang, B, Zhang, J, Wu, Y. A Multiscale Model for the Self-Assembly of Coat Proteins in Bacteriophage MS2. J Chem Inf Model. 2019;59 (9):3899-3909.
    doi: 10.1021/acs.jcim.9b00514. PubMed PMID:31411466. PubMed Central PMC7273741.

  4. Meng, R, Jiang, M, Cui, Z, Chang, JY, Yang, K, Jakana, J et al.. Structural basis for the adsorption of a single-stranded RNA bacteriophage. Nat Commun. 2019;10 (1):3130.
    doi: 10.1038/s41467-019-11126-8. PubMed PMID:31311931. PubMed Central PMC6635492.

  5. Simeon, R, Jiang, M, Chamoun-Emanuelli, AM, Yu, H, Zhang, Y, Meng, R et al.. Selection and characterization of ultrahigh potency designed ankyrin repeat protein inhibitors of C. difficile toxin B. PLoS Biol. 2019;17 (6):e3000311.
    doi: 10.1371/journal.pbio.3000311. PubMed PMID:31233493. PubMed Central PMC6590788.

  6. Brock, DJ, Kustigian, L, Jiang, M, Graham, K, Wang, TY, Erazo-Oliveras, A et al.. Efficient cell delivery mediated by lipid-specific endosomal escape of supercharged branched peptides. Traffic. 2018;19 (6):421-435.
    doi: 10.1111/tra.12566. PubMed PMID:29582528. PubMed Central PMC5948172.

  7. Cui, Z, Gorzelnik, KV, Chang, JY, Langlais, C, Jakana, J, Young, R et al.. Structures of Qβ virions, virus-like particles, and the Qβ-MurA complex reveal internal coat proteins and the mechanism of host lysis. Proc. Natl. Acad. Sci. U.S.A. 2017;114 (44):11697-11702.
    doi: 10.1073/pnas.1707102114. PubMed PMID:29078304. PubMed Central PMC5676892.

  8. Yang, K, Chang, JY, Cui, Z, Li, X, Meng, R, Duan, L et al.. Structural insights into species-specific features of the ribosome from the human pathogen Mycobacterium tuberculosis. Nucleic Acids Res. 2017;45 (18):10884-10894.
    doi: 10.1093/nar/gkx785. PubMed PMID:28977617. PubMed Central PMC5737476.

  9. Weaver, J, Jiang, M, Roth, A, Puchalla, J, Zhang, J, Rye, HS et al.. GroEL actively stimulates folding of the endogenous substrate protein PepQ. Nat Commun. 2017;8 :15934.
    doi: 10.1038/ncomms15934. PubMed PMID:28665408. PubMed Central PMC5497066.

  10. Gorzelnik, KV, Cui, Z, Reed, CA, Jakana, J, Young, R, Zhang, J et al.. Asymmetric cryo-EM structure of the canonical Allolevivirus Qβ reveals a single maturation protein and the genomic ssRNA in situ. Proc. Natl. Acad. Sci. U.S.A. 2016;113 (41):11519-11524.
    doi: 10.1073/pnas.1609482113. PubMed PMID:27671640. PubMed Central PMC5068298.

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