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Xiuren Zhang

Zhang, Xiuren
Xiuren Zhang
Associate Professor
Office:
BOR / Room 112B
Email:
Phone:
979-458-0596
http://plantrnasilencing.tamu.edu
Graduate Education
M.S. Auburn University (1999)
Ph.D Cornell University (2003)
Postdoc: Rockefeller University (2003-2008)
Joined Texas A&M in 2008
Awards
NSF CAREER Award 2013

AGOs-mics / RNA silencing and viral suppression

RNA silencing has emerged as a key regulatory process that controls various aspects of biology in eukaryotes including growth and development, antiviral defense and chromosome gardening. The common themes under RNA silencing include the biogenesis of small RNAs by DICERs and the incorporation of the small RNAs into Argonaute (AGO)-centered RNA-induced silencing complexes (RISCs). The RISCs execute the repressive or regulatory functions on target genes at the transcriptional or post-transcriptional levels.

Our laboratory focuses on systemic analysis of biochemical, molecular and biological functions of AGO family proteins (AGOs-mics) in genetically tractable Arabidopsis and economically important crops (i.e. rice). We’d like to identify the small RNAs, mRNA targets and protein components which associate with these AGOs. We will study protein/RNA and protein/protein interactions in these RISC assembly events. Our goal is to understand how these AGOs are functionally specialized or redundant corresponding to endogenous development cues and external environmental stimuli. Particularly, we’d like to learn how plants reprogram their gene expression through the small RNAs and AGOs to construct a new cellular niche in responses to environmental challenges and biotic stresses.

Another aspect of our research involves host/virus interaction. Plants take advantage of RNA silencing pathways to defend themselves from exogenous nucleic acid invaders (i.e. viruses). As an anti-host defense mechanism, viruses encode suppressors that can block RNA silencing responses. We have recently demonstrated that CMV 2b disables AGO1 cleavage activity to inhibit RNA silencing and to counter host defense. We are now extending our study to suppressors of several other viruses and the molecular mechanisms of their suppression.

Recent Publications

  1. Li, S, Castillo-González, C, Yu, B, Zhang, X. The functions of plant small RNAs in development and in stress responses. Plant J. 2016; :.
    doi: 10.1111/tpj.13444. PubMed PMID:27943457. .

  2. Zhang, Z, Liu, X, Guo, X, Wang, XJ, Zhang, X. Arabidopsis AGO3 predominantly recruits 24-nt small RNAs to regulate epigenetic silencing. Nat Plants. 2016;2 (5):16049.
    doi: 10.1038/nplants.2016.49. PubMed PMID:27243648. .

  3. Tomar, D, Dong, Z, Shanmughapriya, S, Koch, DA, Thomas, T, Hoffman, NE et al.. MCUR1 Is a Scaffold Factor for the MCU Complex Function and Promotes Mitochondrial Bioenergetics. Cell Rep. 2016;15 (8):1673-85.
    doi: 10.1016/j.celrep.2016.04.050. PubMed PMID:27184846. PubMed Central PMC4880542.

  4. Eser, BE, Zhang, X, Chanani, PK, Begley, TP, Ealick, SE. From Suicide Enzyme to Catalyst: The Iron-Dependent Sulfide Transfer in Methanococcus jannaschii Thiamin Thiazole Biosynthesis. J. Am. Chem. Soc. 2016;138 (11):3639-42.
    doi: 10.1021/jacs.6b00445. PubMed PMID:26928142. PubMed Central PMC4805478.

  5. Klionsky, DJ, Abdelmohsen, K, Abe, A, Abedin, MJ, Abeliovich, H, Acevedo Arozena, A et al.. Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition). Autophagy. 2016;12 (1):1-222.
    doi: 10.1080/15548627.2015.1100356. PubMed PMID:26799652. PubMed Central PMC4835977.

  6. Williams, B, Njaci, I, Moghaddam, L, Long, H, Dickman, MB, Zhang, X et al.. Trehalose Accumulation Triggers Autophagy during Plant Desiccation. PLoS Genet. 2015;11 (12):e1005705.
    doi: 10.1371/journal.pgen.1005705. PubMed PMID:26633550. PubMed Central PMC4669190.

  7. Castillo-González, C, Liu, X, Huang, C, Zhao, C, Ma, Z, Hu, T et al.. Geminivirus-encoded TrAP suppressor inhibits the histone methyltransferase SUVH4/KYP to counter host defense. Elife. 2015;4 :e06671.
    doi: 10.7554/eLife.06671. PubMed PMID:26344546. PubMed Central PMC4606454.

  8. Wang, T, Castillo-González, C, You, L, Li, R, Wen, L, Zhu, H et al.. In vitro Reconstitution Assay of miRNA Biogenesis by Arabidopsis DCL1. Bio Protoc. 2015;5 (8):.
    . PubMed PMID:27430007. PubMed Central PMC4943580.

  9. Zhou, Y, Honda, M, Zhu, H, Zhang, Z, Guo, X, Li, T et al.. Spatiotemporal sequestration of miR165/166 by Arabidopsis Argonaute10 promotes shoot apical meristem maintenance. Cell Rep. 2015;10 (11):1819-27.
    doi: 10.1016/j.celrep.2015.02.047. PubMed PMID:25801022. .

  10. Zhu, H, Zhou, Y, Castillo-González, C, Lu, A, Ge, C, Zhao, YT et al.. Bidirectional processing of pri-miRNAs with branched terminal loops by Arabidopsis Dicer-like1. Nat. Struct. Mol. Biol. 2013;20 (9):1106-15.
    doi: 10.1038/nsmb.2646. PubMed PMID:23934148. PubMed Central PMC3766402.

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